Sitemap

• Installation
  • Download
  • Installation executable
  • Installation MATLAB Toolbox
  • Installation additional software
• Getting started
  • How to use CATO
  • Docker
  • Running a subject again
  • Parameters
• Examples
  • Structural processing example
  • Functional processing example
  • BIDS formatted data
  • fMRI preprocessing with Melodic + Fix
  • Cortical reconstruction with FreeSurfer
• Structural pipeline
  • Structural preprocessing
  • Anatomical steps
  • Reconstruction diffusion
  • Reconstruction fibers
  • Reconstruction fiber properties
  • Network reconstruction
• Functional pipeline
  • Preprocessing
  • Anatomical steps
  • Compute motion metrics
  • Network reconstruction
• Structural configuration
  • general step
  • structural_preprocessing step
  • parcellation step
  • collect_region_properties step
  • reconstruction_diffusion step
  • reconstruction_fibers step
  • reconstruction_fiber_properties step
  • reconstruction_network step
• Functional configuration
  • general step
  • functional_preprocessing step
  • parcellation step
  • collect_region_properties step
  • compute_motion_metrics step
  • reconstruction_functional_network step
• Configuration Assistant
• References
  • Citing CATO
  • Bibliography